# pack.py -- For dealing wih packed git objects. # Copyright (C) 2007 James Westby # Copryight (C) 2008 Jelmer Vernooij # # This program is free software; you can redistribute it and/or # modify it under the terms of the GNU General Public License # as published by the Free Software Foundation; version 2 # of the License or (at your option) a later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, write to the Free Software # Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, # MA 02110-1301, USA. """Classes for dealing with packed git objects. A pack is a compact representation of a bunch of objects, stored using deltas where possible. They have two parts, the pack file, which stores the data, and an index that tells you where the data is. To find an object you look in all of the index files 'til you find a match for the object name. You then use the pointer got from this as a pointer in to the corresponding packfile. """ try: from collections import defaultdict except ImportError: from misc import defaultdict from itertools import imap, izip import mmap import os import struct try: from struct import unpack_from except ImportError: from dulwich.misc import unpack_from import sys import zlib import difflib from dulwich.objects import ( ShaFile, hex_to_sha, sha_to_hex, ) from dulwich.errors import ApplyDeltaError from dulwich.misc import make_sha supports_mmap_offset = (sys.version_info[0] >= 3 or (sys.version_info[0] == 2 and sys.version_info[1] >= 6)) def take_msb_bytes(map, offset): ret = [] while len(ret) == 0 or ret[-1] & 0x80: ret.append(ord(map[offset])) offset += 1 return ret def read_zlib(data, offset, dec_size): obj = zlib.decompressobj() x = "" fed = 0 while obj.unused_data == "": base = offset+fed add = data[base:base+1024] if len(add) < 1024: add += "Z" fed += len(add) x += obj.decompress(add) assert len(x) == dec_size comp_len = fed-len(obj.unused_data) return x, comp_len def iter_sha1(iter): sha1 = make_sha() for name in iter: sha1.update(name) return sha1.hexdigest() MAX_MMAP_SIZE = 256 * 1024 * 1024 def simple_mmap(f, offset, size, access=mmap.ACCESS_READ): """Simple wrapper for mmap() which always supports the offset parameter. :param f: File object. :param offset: Offset in the file, from the beginning of the file. :param size: Size of the mmap'ed area :param access: Access mechanism. :return: MMAP'd area. """ if offset+size > MAX_MMAP_SIZE and not supports_mmap_offset: raise AssertionError("%s is larger than 256 meg, and this version " "of Python does not support the offset argument to mmap().") if supports_mmap_offset: return mmap.mmap(f.fileno(), size, access=access, offset=offset) else: class ArraySkipper(object): def __init__(self, array, offset): self.array = array self.offset = offset def __getslice__(self, i, j): return self.array[i+self.offset:j+self.offset] def __getitem__(self, i): return self.array[i+self.offset] def __len__(self): return len(self.array) - self.offset def __str__(self): return str(self.array[self.offset:]) mem = mmap.mmap(f.fileno(), size+offset, access=access) if offset == 0: return mem return ArraySkipper(mem, offset) def resolve_object(offset, type, obj, get_ref, get_offset): """Resolve an object, possibly resolving deltas when necessary.""" if not type in (6, 7): # Not a delta return type, obj if type == 6: # offset delta (delta_offset, delta) = obj assert isinstance(delta_offset, int) assert isinstance(delta, str) offset = offset-delta_offset type, base_obj = get_offset(offset) assert isinstance(type, int) elif type == 7: # ref delta (basename, delta) = obj assert isinstance(basename, str) and len(basename) == 20 assert isinstance(delta, str) type, base_obj = get_ref(basename) assert isinstance(type, int) type, base_text = resolve_object(offset, type, base_obj, get_ref, get_offset) return type, apply_delta(base_text, delta) class PackIndex(object): """An index in to a packfile. Given a sha id of an object a pack index can tell you the location in the packfile of that object if it has it. To do the loop it opens the file, and indexes first 256 4 byte groups with the first byte of the sha id. The value in the four byte group indexed is the end of the group that shares the same starting byte. Subtract one from the starting byte and index again to find the start of the group. The values are sorted by sha id within the group, so do the math to find the start and end offset and then bisect in to find if the value is present. """ def __init__(self, filename): """Create a pack index object. Provide it with the name of the index file to consider, and it will map it whenever required. """ self._filename = filename # Take the size now, so it can be checked each time we map the file to # ensure that it hasn't changed. self._size = os.path.getsize(filename) self._file = open(filename, 'r') self._contents = simple_mmap(self._file, 0, self._size) if self._contents[:4] != '\377tOc': self.version = 1 self._fan_out_table = self._read_fan_out_table(0) else: (self.version, ) = unpack_from(">L", self._contents, 4) assert self.version in (2,), "Version was %d" % self.version self._fan_out_table = self._read_fan_out_table(8) self._name_table_offset = 8 + 0x100 * 4 self._crc32_table_offset = self._name_table_offset + 20 * len(self) self._pack_offset_table_offset = self._crc32_table_offset + 4 * len(self) def __eq__(self, other): if type(self) != type(other): return False if self._fan_out_table != other._fan_out_table: return False for (name1, _, _), (name2, _, _) in izip(self.iterentries(), other.iterentries()): if name1 != name2: return False return True def close(self): self._file.close() def __len__(self): """Return the number of entries in this pack index.""" return self._fan_out_table[-1] def _unpack_entry(self, i): """Unpack the i-th entry in the index file. :return: Tuple with object name (SHA), offset in pack file and CRC32 checksum (if known).""" if self.version == 1: (offset, name) = unpack_from(">L20s", self._contents, (0x100 * 4) + (i * 24)) return (name, offset, None) else: return (self._unpack_name(i), self._unpack_offset(i), self._unpack_crc32_checksum(i)) def _unpack_name(self, i): if self.version == 1: return self._unpack_entry(i)[0] else: return unpack_from("20s", self._contents, self._name_table_offset + i * 20)[0] def _unpack_offset(self, i): if self.version == 1: return self._unpack_entry(i)[1] else: return unpack_from(">L", self._contents, self._pack_offset_table_offset + i * 4)[0] def _unpack_crc32_checksum(self, i): if self.version == 1: return None else: return unpack_from(">L", self._contents, self._crc32_table_offset + i * 4)[0] def __iter__(self): return imap(sha_to_hex, self._itersha()) def _itersha(self): for i in range(len(self)): yield self._unpack_name(i) def objects_sha1(self): return iter_sha1(self._itersha()) def iterentries(self): """Iterate over the entries in this pack index. Will yield tuples with object name, offset in packfile and crc32 checksum. """ for i in range(len(self)): yield self._unpack_entry(i) def _read_fan_out_table(self, start_offset): ret = [] for i in range(0x100): ret.append(struct.unpack(">L", self._contents[start_offset+i*4:start_offset+(i+1)*4])[0]) return ret def check(self): """Check that the stored checksum matches the actual checksum.""" return self.calculate_checksum() == self.get_stored_checksums()[1] def calculate_checksum(self): f = open(self._filename, 'r') try: return make_sha(self._contents[:-20]).digest() finally: f.close() def get_stored_checksums(self): """Return the SHA1 checksums stored for the corresponding packfile and this header file itself.""" return str(self._contents[-40:-20]), str(self._contents[-20:]) def object_index(self, sha): """Return the index in to the corresponding packfile for the object. Given the name of an object it will return the offset that object lives at within the corresponding pack file. If the pack file doesn't have the object then None will be returned. """ size = os.path.getsize(self._filename) assert size == self._size, "Pack index %s has changed size, I don't " \ "like that" % self._filename if len(sha) == 40: sha = hex_to_sha(sha) return self._object_index(sha) def _object_index(self, sha): """See object_index""" idx = ord(sha[0]) if idx == 0: start = 0 else: start = self._fan_out_table[idx-1] end = self._fan_out_table[idx] assert start <= end while start <= end: i = (start + end)/2 file_sha = self._unpack_name(i) if file_sha < sha: start = i + 1 elif file_sha > sha: end = i - 1 else: return self._unpack_offset(i) return None def read_pack_header(f): header = f.read(12) assert header[:4] == "PACK" (version,) = unpack_from(">L", header, 4) assert version in (2, 3), "Version was %d" % version (num_objects,) = unpack_from(">L", header, 8) return (version, num_objects) def read_pack_tail(f): return (f.read(20),) def unpack_object(map): bytes = take_msb_bytes(map, 0) type = (bytes[0] >> 4) & 0x07 size = bytes[0] & 0x0f for i, byte in enumerate(bytes[1:]): size += (byte & 0x7f) << ((i * 7) + 4) raw_base = len(bytes) if type == 6: # offset delta bytes = take_msb_bytes(map, raw_base) assert not (bytes[-1] & 0x80) delta_base_offset = bytes[0] & 0x7f for byte in bytes[1:]: delta_base_offset += 1 delta_base_offset <<= 7 delta_base_offset += (byte & 0x7f) raw_base+=len(bytes) uncomp, comp_len = read_zlib(map, raw_base, size) assert size == len(uncomp) return type, (delta_base_offset, uncomp), comp_len+raw_base elif type == 7: # ref delta basename = map[raw_base:raw_base+20] uncomp, comp_len = read_zlib(map, raw_base+20, size) assert size == len(uncomp) return type, (basename, uncomp), comp_len+raw_base+20 else: uncomp, comp_len = read_zlib(map, raw_base, size) assert len(uncomp) == size return type, uncomp, comp_len+raw_base class PackData(object): """The data contained in a packfile. Pack files can be accessed both sequentially for exploding a pack, and directly with the help of an index to retrieve a specific object. The objects within are either complete or a delta aginst another. The header is variable length. If the MSB of each byte is set then it indicates that the subsequent byte is still part of the header. For the first byte the next MS bits are the type, which tells you the type of object, and whether it is a delta. The LS byte is the lowest bits of the size. For each subsequent byte the LS 7 bits are the next MS bits of the size, i.e. the last byte of the header contains the MS bits of the size. For the complete objects the data is stored as zlib deflated data. The size in the header is the uncompressed object size, so to uncompress you need to just keep feeding data to zlib until you get an object back, or it errors on bad data. This is done here by just giving the complete buffer from the start of the deflated object on. This is bad, but until I get mmap sorted out it will have to do. Currently there are no integrity checks done. Also no attempt is made to try and detect the delta case, or a request for an object at the wrong position. It will all just throw a zlib or KeyError. """ def __init__(self, filename): """Create a PackData object that represents the pack in the given filename. The file must exist and stay readable until the object is disposed of. It must also stay the same size. It will be mapped whenever needed. Currently there is a restriction on the size of the pack as the python mmap implementation is flawed. """ self._filename = filename assert os.path.exists(filename), "%s is not a packfile" % filename self._size = os.path.getsize(filename) self._header_size = 12 assert self._size >= self._header_size, "%s is too small for a packfile (%d < %d)" % (filename, self._size, self._header_size) self._read_header() def _read_header(self): f = open(self._filename, 'rb') try: (version, self._num_objects) = \ read_pack_header(f) f.seek(self._size-20) (self._stored_checksum,) = read_pack_tail(f) finally: f.close() def __len__(self): """Returns the number of objects in this pack.""" return self._num_objects def calculate_checksum(self): """Calculate the checksum for this pack.""" f = open(self._filename, 'rb') try: map = simple_mmap(f, 0, self._size) return make_sha(map[:-20]).digest() finally: f.close() def iterobjects(self): offset = self._header_size f = open(self._filename, 'rb') for i in range(len(self)): map = simple_mmap(f, offset, self._size-offset) (type, obj, total_size) = unpack_object(map) yield offset, type, obj offset += total_size f.close() def iterentries(self, ext_resolve_ref=None): found = {} at = {} postponed = defaultdict(list) class Postpone(Exception): """Raised to postpone delta resolving.""" def get_ref_text(sha): if sha in found: return found[sha] if ext_resolve_ref: try: return ext_resolve_ref(sha) except KeyError: pass raise Postpone, (sha, ) todo = list(self.iterobjects()) while todo: (offset, type, obj) = todo.pop(0) at[offset] = (type, obj) assert isinstance(offset, int) assert isinstance(type, int) assert isinstance(obj, tuple) or isinstance(obj, str) try: type, obj = resolve_object(offset, type, obj, get_ref_text, at.__getitem__) except Postpone, (sha, ): postponed[sha].append((offset, type, obj)) else: shafile = ShaFile.from_raw_string(type, obj) sha = shafile.sha().digest() found[sha] = (type, obj) yield sha, offset, shafile.crc32() todo += postponed.get(sha, []) if postponed: raise KeyError([sha_to_hex(h) for h in postponed.keys()]) def sorted_entries(self, resolve_ext_ref=None): ret = list(self.iterentries(resolve_ext_ref)) ret.sort() return ret def create_index_v1(self, filename, resolve_ext_ref=None): entries = self.sorted_entries(resolve_ext_ref) write_pack_index_v1(filename, entries, self.calculate_checksum()) def create_index_v2(self, filename, resolve_ext_ref=None): entries = self.sorted_entries(resolve_ext_ref) write_pack_index_v2(filename, entries, self.calculate_checksum()) def get_stored_checksum(self): return self._stored_checksum def check(self): return (self.calculate_checksum() == self.get_stored_checksum()) def get_object_at(self, offset): """Given an offset in to the packfile return the object that is there. Using the associated index the location of an object can be looked up, and then the packfile can be asked directly for that object using this function. """ assert isinstance(offset, long) or isinstance(offset, int),\ "offset was %r" % offset assert offset >= self._header_size size = os.path.getsize(self._filename) assert size == self._size, "Pack data %s has changed size, I don't " \ "like that" % self._filename f = open(self._filename, 'rb') try: map = simple_mmap(f, offset, size-offset) return unpack_object(map)[:2] finally: f.close() class SHA1Writer(object): def __init__(self, f): self.f = f self.sha1 = make_sha("") def write(self, data): self.sha1.update(data) self.f.write(data) def write_sha(self): sha = self.sha1.digest() assert len(sha) == 20 self.f.write(sha) return sha def close(self): sha = self.write_sha() self.f.close() return sha def tell(self): return self.f.tell() def write_pack_object(f, type, object): """Write pack object to a file. :param f: File to write to :param o: Object to write """ ret = f.tell() if type == 6: # ref delta (delta_base_offset, object) = object elif type == 7: # offset delta (basename, object) = object size = len(object) c = (type << 4) | (size & 15) size >>= 4 while size: f.write(chr(c | 0x80)) c = size & 0x7f size >>= 7 f.write(chr(c)) if type == 6: # offset delta ret = [delta_base_offset & 0x7f] delta_base_offset >>= 7 while delta_base_offset: delta_base_offset -= 1 ret.insert(0, 0x80 | (delta_base_offset & 0x7f)) delta_base_offset >>= 7 f.write("".join([chr(x) for x in ret])) elif type == 7: # ref delta assert len(basename) == 20 f.write(basename) f.write(zlib.compress(object)) return f.tell() def write_pack(filename, objects, num_objects): f = open(filename + ".pack", 'w') try: entries, data_sum = write_pack_data(f, objects, num_objects) finally: f.close() entries.sort() write_pack_index_v2(filename + ".idx", entries, data_sum) def write_pack_data(f, objects, num_objects, window=10): """Write a new pack file. :param filename: The filename of the new pack file. :param objects: List of objects to write (tuples with object and path) :return: List with (name, offset, crc32 checksum) entries, pack checksum """ recency = list(objects) # FIXME: Somehow limit delta depth # FIXME: Make thin-pack optional (its not used when cloning a pack) # Build a list of objects ordered by the magic Linus heuristic # This helps us find good objects to diff against us magic = [] for obj, path in recency: magic.append( (obj.type, path, 1, -len(obj.as_raw_string()[1]), obj) ) magic.sort() # Build a map of objects and their index in magic - so we can find preceeding objects # to diff against offs = {} for i in range(len(magic)): offs[magic[i][4]] = i # Write the pack entries = [] f = SHA1Writer(f) f.write("PACK") # Pack header f.write(struct.pack(">L", 2)) # Pack version f.write(struct.pack(">L", num_objects)) # Number of objects in pack for o, path in recency: sha1 = o.sha().digest() crc32 = o.crc32() orig_t, raw = o.as_raw_string() winner = raw t = orig_t #for i in range(offs[o]-window, window): # if i < 0 or i >= len(offs): continue # b = magic[i][4] # if b.type != orig_t: continue # _, base = b.as_raw_string() # delta = create_delta(base, raw) # if len(delta) < len(winner): # winner = delta # t = 6 if magic[i][2] == 1 else 7 offset = write_pack_object(f, t, winner) entries.append((sha1, offset, crc32)) return entries, f.write_sha() def write_pack_index_v1(filename, entries, pack_checksum): """Write a new pack index file. :param filename: The filename of the new pack index file. :param entries: List of tuples with object name (sha), offset_in_pack, and crc32_checksum. :param pack_checksum: Checksum of the pack file. """ f = open(filename, 'w') f = SHA1Writer(f) fan_out_table = defaultdict(lambda: 0) for (name, offset, entry_checksum) in entries: fan_out_table[ord(name[0])] += 1 # Fan-out table for i in range(0x100): f.write(struct.pack(">L", fan_out_table[i])) fan_out_table[i+1] += fan_out_table[i] for (name, offset, entry_checksum) in entries: f.write(struct.pack(">L20s", offset, name)) assert len(pack_checksum) == 20 f.write(pack_checksum) f.close() def create_delta(base_buf, target_buf): """Use python difflib to work out how to transform base_buf to target_buf""" assert isinstance(base_buf, str) assert isinstance(target_buf, str) out_buf = "" # write delta header def encode_size(size): ret = "" c = size & 0x7f size >>= 7 while size: ret += chr(c | 0x80) c = size & 0x7f size >>= 7 ret += chr(c) return ret out_buf += encode_size(len(base_buf)) out_buf += encode_size(len(target_buf)) # write out delta opcodes seq = difflib.SequenceMatcher(a=base_buf, b=target_buf) for opcode, i1, i2, j1, j2 in seq.get_opcodes(): # Git patch opcodes don't care about deletes! #if opcode == "replace" or opcode == "delete": # pass if opcode == "equal": # If they are equal, unpacker will use data from base_buf # Write out an opcode that says what range to use scratch = "" op = 0x80 o = i1 for i in range(4): if o & 0xff << i*8: scratch += chr(o >> i) op |= 1 << i s = i2 - i1 for i in range(2): if s & 0xff << i*8: scratch += chr(s >> i) op |= 1 << (4+i) out_buf += chr(op) out_buf += scratch if opcode == "replace" or opcode == "insert": # If we are replacing a range or adding one, then we just # output it to the stream (prefixed by its size) s = j2 - j1 o = j1 while s > 127: out_buf += chr(127) out_buf += target_buf[o:o+127] s -= 127 o += 127 out_buf += chr(s) out_buf += target_buf[o:o+s] return out_buf def apply_delta(src_buf, delta): """Based on the similar function in git's patch-delta.c.""" assert isinstance(src_buf, str), "was %r" % (src_buf,) assert isinstance(delta, str) out = [] index = 0 delta_length = len(delta) def pop(delta, index): ret = delta[index] index += 1 return ord(ret), index def get_delta_header_size(delta, index): size = 0 i = 0 while delta: cmd, index = pop(delta, index) size |= (cmd & ~0x80) << i i += 7 if not cmd & 0x80: break return size, index src_size, index = get_delta_header_size(delta, index) dest_size, index = get_delta_header_size(delta, index) assert src_size == len(src_buf), "%d vs %d" % (src_size, len(src_buf)) while index < delta_length: cmd, index = pop(delta, index) if cmd & 0x80: cp_off = 0 for i in range(4): if cmd & (1 << i): x, index = pop(delta, index) cp_off |= x << (i * 8) cp_size = 0 for i in range(3): if cmd & (1 << (4+i)): x, index = pop(delta, index) cp_size |= x << (i * 8) if cp_size == 0: cp_size = 0x10000 if (cp_off + cp_size < cp_size or cp_off + cp_size > src_size or cp_size > dest_size): break out.append(src_buf[cp_off:cp_off+cp_size]) elif cmd != 0: out.append(delta[index:index+cmd]) index += cmd else: raise ApplyDeltaError("Invalid opcode 0") if index != delta_length: raise ApplyDeltaError("delta not empty: %r" % delta[index:]) out = ''.join(out) if dest_size != len(out): raise ApplyDeltaError("dest size incorrect") return out def write_pack_index_v2(filename, entries, pack_checksum): """Write a new pack index file. :param filename: The filename of the new pack index file. :param entries: List of tuples with object name (sha), offset_in_pack, and crc32_checksum. :param pack_checksum: Checksum of the pack file. """ f = open(filename, 'w') f = SHA1Writer(f) f.write('\377tOc') # Magic! f.write(struct.pack(">L", 2)) fan_out_table = defaultdict(lambda: 0) for (name, offset, entry_checksum) in entries: fan_out_table[ord(name[0])] += 1 # Fan-out table for i in range(0x100): f.write(struct.pack(">L", fan_out_table[i])) fan_out_table[i+1] += fan_out_table[i] for (name, offset, entry_checksum) in entries: f.write(name) for (name, offset, entry_checksum) in entries: f.write(struct.pack(">L", entry_checksum)) for (name, offset, entry_checksum) in entries: # FIXME: handle if MSBit is set in offset f.write(struct.pack(">L", offset)) # FIXME: handle table for pack files > 8 Gb assert len(pack_checksum) == 20 f.write(pack_checksum) f.close() class Pack(object): def __init__(self, basename): self._basename = basename self._data_path = self._basename + ".pack" self._idx_path = self._basename + ".idx" self._data = None self._idx = None def name(self): return self.idx.objects_sha1() @property def data(self): if self._data is None: self._data = PackData(self._data_path) assert len(self.idx) == len(self._data) idx_stored_checksum = self.idx.get_stored_checksums()[0] data_stored_checksum = self._data.get_stored_checksum() if idx_stored_checksum != data_stored_checksum: raise AssertionError("Checksum for index does not match checksum for pack: %s != %s" % (sha_to_hex(idx_stored_checksum), sha_to_hex(data_stored_checksum))) return self._data @property def idx(self): if self._idx is None: self._idx = PackIndex(self._idx_path) return self._idx def close(self): if self._data is not None: self._data.close() self.idx.close() def __eq__(self, other): return type(self) == type(other) and self.idx == other.idx def __len__(self): """Number of entries in this pack.""" return len(self.idx) def __repr__(self): return "Pack(%r)" % self._basename def __iter__(self): """Iterate over all the sha1s of the objects in this pack.""" return iter(self.idx) def check(self): return self.idx.check() and self.data.check() def get_stored_checksum(self): return self.data.get_stored_checksum() def __contains__(self, sha1): """Check whether this pack contains a particular SHA1.""" return (self.idx.object_index(sha1) is not None) def get_raw(self, sha1, resolve_ref=None): offset = self.idx.object_index(sha1) if offset is None: raise KeyError(sha1) type, obj = self.data.get_object_at(offset) if isinstance(offset, long): offset = int(offset) assert isinstance(offset, int) return resolve_object(offset, type, obj, resolve_ref, self.data.get_object_at) def __getitem__(self, sha1): """Retrieve the specified SHA1.""" type, uncomp = self.get_raw(sha1) return ShaFile.from_raw_string(type, uncomp) def iterobjects(self, get_raw=None): if get_raw is None: def get_raw(x): raise KeyError(x) for offset, type, obj in self.data.iterobjects(): assert isinstance(offset, int) yield ShaFile.from_raw_string( *resolve_object(offset, type, obj, get_raw, self.data.get_object_at)) def load_packs(path): if not os.path.exists(path): return for name in os.listdir(path): if name.startswith("pack-") and name.endswith(".pack"): yield Pack(os.path.join(path, name[:-len(".pack")]))